Tag: Sequential Monte Carlo
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Noise Adaptive Group Testing
This note is for Cuturi, M., Teboul, O., Berthet, Q., Doucet, A., & Vert, J.-P. (2020). Noisy Adaptive Group Testing using Bayesian Sequential Experimental Design.
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SMC for Protein Folding Problem
This note is based on Wong, S. W. K., Liu, J. S., & Kou, S. C. (2018). Exploring the conformational space for protein folding with sequential Monte Carlo. The Annals of Applied Statistics, 12(3), 1628–1654.
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Annealed SMC for Bayesian Phylogenetics
This note is for Wang, L., Wang, S., & Bouchard-Côté, A. (2018). An Annealed Sequential Monte Carlo Method for Bayesian Phylogenetics. ArXiv:1806.08813 [q-Bio, Stat].
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Sequential Monte Carlo Methods
This note is for Section 3 of Doucet, A., & Johansen, A. M. (2009). A tutorial on particle filtering and smoothing: Fifteen years later. Handbook of Nonlinear Filtering, 12(656–704), 3., and it is the complement of my previous post.
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Particle Filtering and Smoothing
This note is for Doucet, A., & Johansen, A. M. (2009). A tutorial on particle filtering and smoothing: Fifteen years later. Handbook of Nonlinear Filtering, 12(656–704), 3. For the sake of clarity, I split the general SMC methods (section 3) into my next post.
- SMC in Biological Problems
- SMC for Mixture Distribution
- Sequential Monte Carlo samplers
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Sequential Monte Carlo Methods
The first peep to SMC as an abecedarian, a more comprehensive note can be found here.