# WeiYa's Work Yard

## Sequential Monte Carlo Methods

##### January 19, 2019

This note is for Section 3 of Doucet, A., & Johansen, A. M. (2009). A tutorial on particle filtering and smoothing: Fifteen years later. Handbook of Nonlinear Filtering, 12(656–704), 3., and it is the complement of my previous post.

## Particle Filtering and Smoothing

##### January 18, 2019 0 Comments

This note is for Doucet, A., & Johansen, A. M. (2009). A tutorial on particle filtering and smoothing: Fifteen years later. Handbook of Nonlinear Filtering, 12(656–704), 3. For the sake of clarity, I split the general SMC methods (section 3) into my next post.

## Reconstruct Gaussian DAG

##### January 08, 2019

This note is based on Li (1991) and Ma and Zhu (2012).

## Jackknife and Mutual Information

##### January 07, 2019

The jackknife is based on Wasserman (2006) and Efron and Hastie (2016), while the Jackknife estimation of Mutual Information is based on Zeng et al. (2018).

## Metabolic Network and Their Evolution

##### December 31, 2018

The note is for Chapter 2 of Soyer, Orkun S., ed. 2012 Evolutionary Systems Biology. Advances in Experimental Medicine and Biology, 751. New York: Springer.

## Evolutionary Systems Biology

##### December 30, 2018

The note is for Chapter 1 of Soyer, Orkun S., ed. 2012 Evolutionary Systems Biology. Advances in Experimental Medicine and Biology, 751. New York: Springer.

## Essentials of Survival Time Analysis

##### October 11, 2017 0 Comments

This post aims to clarify the relationship between rates and probabilities.

## Stochastic Epidemic Models

##### October 11, 2017 0 Comments

Discuss three different methods for formulating stochastic epidemic models.

## An R Package: Fit Repeated Linear Regressions

##### September 26, 2017 0 Comments

Repeated Linear Regressions refer to a set of linear regressions in which there are several same variables.

## A Faster Algorithm for Repeated Linear Regression

##### September 21, 2017 0 Comments

Repeated Linear Regression means that repeat the fitting of linear regression for many times, and there are some common parts among these regressions.

## Dynamics of Helicobacter pylori Infection

##### September 02, 2017 0 Comments

This post is the notes of this paper.

## Healthy Human Microbiome

##### September 02, 2017 0 Comments

This post is the notes of this paper.

## Dynamics of Helicobacter pylori colonization

##### September 01, 2017 0 Comments

This post is the notes of this paper.