The Kalman Filter and Extended Kalman Filter
January 21, 2019
Sequential Monte Carlo Methods
January 19, 2019
This note is for Section 3 of Doucet, A., & Johansen, A. M. (2009). A tutorial on particle filtering and smoothing: Fifteen years later. Handbook of Nonlinear Filtering, 12(656–704), 3., and it is the complement of my previous post.
Particle Filtering and Smoothing
January 18, 2019 0 Comments
This note is for Doucet, A., & Johansen, A. M. (2009). A tutorial on particle filtering and smoothing: Fifteen years later. Handbook of Nonlinear Filtering, 12(656–704), 3. For the sake of clarity, I split the general SMC methods (section 3) into my next post.
PLS in High-Dimensional Regression
January 15, 2019
This note is based on Cook, R. D., & Forzani, L. (2019). Partial least squares prediction in high-dimensional regression. The Annals of Statistics, 47(2), 884–908.
Approximate $\ell_0$-penalized piecewise-constant estimate of graphs
January 13, 2019
Reversible jump Markov chain Monte Carlo
January 10, 2019
The note is for Green, P.J. (1995). “Reversible Jump Markov Chain Monte Carlo Computation and Bayesian Model Determination”. Biometrika. 82 (4): 711–732.
Reconstruct Gaussian DAG
January 09, 2019
This note is based on Yuan, Y., Shen, X., Pan, W., & Wang, Z. (n.d.). Constrained likelihood for reconstructing a directed acyclic Gaussian graph. Biometrika.
Link-free v.s. Semiparametric
January 08, 2019
This note is based on Li (1991) and Ma and Zhu (2012).
Jackknife and Mutual Information
January 07, 2019
The jackknife is based on Wasserman (2006) and Efron and Hastie (2016), while the Jackknife estimation of Mutual Information is based on Zeng et al. (2018).
Counting Process Based Dimension Reduction Methods for Censored Data
January 06, 2019
SIR and Its Implementation
January 05, 2019 0 Comments
Small World inside Large Metabolic Networks
January 02, 2019
Metabolic Network and Their Evolution
December 31, 2018
The note is for Chapter 2 of Soyer, Orkun S., ed. 2012 Evolutionary Systems Biology. Advances in Experimental Medicine and Biology, 751. New York: Springer.
Evolutionary Systems Biology
December 30, 2018
The note is for Chapter 1 of Soyer, Orkun S., ed. 2012 Evolutionary Systems Biology. Advances in Experimental Medicine and Biology, 751. New York: Springer.
Gibbs in genetics
August 24, 2018
The note is for Gilks, W. R., Richardson, S., & Spiegelhalter, D. (Eds.). (1995). Markov chain Monte Carlo in practice. CRC press..
ECOC
August 18, 2018
Metabolic Network
August 08, 2018
Power Analysis
December 27, 2017 0 Comments
Model-Free Scoring System for Risk Prediction
October 17, 2017 0 Comments
Essentials of Survival Time Analysis
October 11, 2017 0 Comments
This post aims to clarify the relationship between rates and probabilities.
Stochastic Epidemic Models
October 11, 2017 0 Comments
Discuss three different methods for formulating stochastic epidemic models.
An R Package: Fit Repeated Linear Regressions
September 26, 2017 0 Comments
Repeated Linear Regressions refer to a set of linear regressions in which there are several same variables.
A Faster Algorithm for Repeated Linear Regression
September 21, 2017 0 Comments
Repeated Linear Regression means that repeat the fitting of linear regression for many times, and there are some common parts among these regressions.
Persistence of species in the face of environmental stochasticity
September 18, 2017 0 Comments
Chain-Structured Models
September 08, 2017 0 Comments
Basic Principles of Monte Carlo
September 07, 2017 0 Comments
The Applications of Monte Carlo
September 07, 2017 0 Comments
Dynamics of Helicobacter pylori Infection
September 02, 2017 0 Comments
This post is the notes of this paper.
Healthy Human Microbiome
September 02, 2017 0 Comments
This post is the notes of this paper.
Dynamics of Helicobacter pylori colonization
September 01, 2017 0 Comments
This post is the notes of this paper.