Tag: Graph
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Similarity Network Fusion
This post is for Wang, B., Mezlini, A. M., Demir, F., Fiume, M., Tu, Z., Brudno, M., Haibe-Kains, B., & Goldenberg, A. (2014). Similarity network fusion for aggregating data types on a genomic scale. Nature Methods, 11(3), Article 3. and a related paper Ruan, P., Wang, Y., Shen, R., & Wang, S. (2019). Using association signal annotations to boost similarity network fusion. Bioinformatics, 35(19), 3718–3726.
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First Glance at KEGGgraph
This post is based on
- Joint Bayesian Variable and DAG Selection
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Gaussian DAGs on Network Data
This post is based on Li, H., & Zhou, Q. (2019). Gaussian DAGs on network data. ArXiv:1905.10848 [Cs, Stat].
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MLE for MTP2
This post is based on Lauritzen, S., Uhler, C., & Zwiernik, P. (2019). Maximum likelihood estimation in Gaussian models under total positivity. The Annals of Statistics, 47(4), 1835–1863.
- Approximate $\ell_0$-penalized piecewise-constant estimate of graphs
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Reconstruct Gaussian DAG
This note is based on Yuan, Y., Shen, X., Pan, W., & Wang, Z. (2019). Constrained likelihood for reconstructing a directed acyclic Gaussian graph. Biometrika, 106(1), 109–125.