Single-cell Graph Neural Network

Posted on Oct 08, 2022

This note is for Prof. Dong Xu’s talk on Wang, J., Ma, A., Chang, Y., Gong, J., Jiang, Y., Qi, R., Wang, C., Fu, H., Ma, Q., & Xu, D. (2021). ScGNN is a novel graph neural network framework for single-cell RNA-Seq analyses. Nature Communications, 12(1), Article 1.

It inspires me to learn more about GNN, and I found a fantastic series of slides CS224W @ Stanford: Machine Learning with Graphs.

See also:

• https://github.com/juexinwang/scGNN
• https://github.com/pyg-team/pytorch_geometric